PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00006376001
Common NameGSBRNA2T00006376001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 240aa    MW: 26437.1 Da    PI: 7.1423
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00006376001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.64.2e-3871071100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC ++Cv+apyf+ e+ +++fa++hk+FGasn +kl+++lp+++r da++++ yeA+ r++dP+yG+v+ i++lqqq+ +
  GSBRNA2T00006376001   7 PCGACKFLRRKCIEGCVFAPYFCYEEgSSNFAAIHKVFGASNFSKLISHLPDQDRCDAVRTISYEAQSRLHDPIYGCVSQIFSLQQQVVS 96 
                          7***********************9979************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+a+++ll+ee
  GSBRNA2T00006376001  97 LQAQVVLLREE 107
                          *****999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.5936108IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-357105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGGLGSPCGA CKFLRRKCIE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDQD  60
RCDAVRTISY EAQSRLHDPI YGCVSQIFSL QQQVVSLQAQ VVLLREEASR KFPQGDCSEQ  120
GEFLAQDTPQ DLHSWFHQVV SDSNLNQMSD VASTSIDHDE SLCRDNKVVM KKQVVFGVIL  180
LALFLIFINA KQVEATRLLG TTVDSEIRSV FQSLQKGTVP ESGRNRCTHI PKGSGKCHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00006376001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738501e-142AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747190.11e-123PREDICTED: LOB domain-containing protein 14-like
RefseqXP_013747189.11e-123PREDICTED: LOB domain-containing protein 14-like
RefseqXP_009141174.11e-123PREDICTED: LOB domain-containing protein 14-like
SwissprotQ9SJW53e-94LBD14_ARATH; LOB domain-containing protein 14
TrEMBLA0A078G3691e-178A0A078G369_BRANA; BnaA04g18380D protein
STRINGBra021737.1-P1e-177(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31310.12e-77LOB domain-containing protein 14
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]